name: scMIR
channels:
  - conda-forge
  - bioconda
  - r
  - defaults
dependencies:
  - _libgcc_mutex=0.1=conda_forge
  - _openmp_mutex=4.5=1_gnu
  - _r-mutex=1.0.1=anacondar_1
  - anyio=3.5.0=py310hff52083_0
  - argon2-cffi=21.3.0=pyhd8ed1ab_0
  - argon2-cffi-bindings=21.2.0=py310h6acc77f_1
  - arpack=3.7.0=hdefa2d7_2
  - asttokens=2.0.5=pyhd8ed1ab_0
  - attrs=21.4.0=pyhd8ed1ab_0
  - babel=2.9.1=pyh44b312d_0
  - backcall=0.2.0=pyh9f0ad1d_0
  - backports=1.0=py_2
  - backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0
  - binutils_impl_linux-64=2.36.1=h193b22a_2
  - binutils_linux-64=2.36=hf3e587d_4
  - black=21.12b0=pyhd8ed1ab_0
  - bleach=4.1.0=pyhd8ed1ab_0
  - brotlipy=0.7.0=py310h6acc77f_1003
  - bwidget=1.9.14=ha770c72_1
  - bzip2=1.0.8=h7f98852_4
  - c-ares=1.18.1=h7f98852_0
  - ca-certificates=2023.7.22=hbcca054_0
  - cached-property=1.5.2=hd8ed1ab_1
  - cached_property=1.5.2=pyha770c72_1
  - cairo=1.16.0=ha00ac49_1009
  - certifi=2023.7.22=pyhd8ed1ab_0
  - cffi=1.15.0=py310h0fdd8cc_0
  - charset-normalizer=2.0.10=pyhd8ed1ab_0
  - click=8.0.3=py310hff52083_1
  - colorama=0.4.4=pyh9f0ad1d_0
  - cryptography=39.0.1=py310h9ce1e76_2
  - curl=7.81.0=h494985f_0
  - dataclasses=0.8=pyhc8e2a94_3
  - debugpy=1.5.1=py310h122e73d_0
  - decorator=5.1.1=pyhd8ed1ab_0
  - defusedxml=0.7.1=pyhd8ed1ab_0
  - entrypoints=0.3=pyhd8ed1ab_1003
  - executing=0.8.2=pyhd8ed1ab_0
  - flit-core=3.6.0=pyhd8ed1ab_0
  - font-ttf-dejavu-sans-mono=2.37=hab24e00_0
  - font-ttf-inconsolata=3.000=h77eed37_0
  - font-ttf-source-code-pro=2.038=h77eed37_0
  - font-ttf-ubuntu=0.83=hab24e00_0
  - fontconfig=2.13.1=hba837de_1005
  - fonts-conda-ecosystem=1=0
  - fonts-conda-forge=1=0
  - freetype=2.10.4=h0708190_1
  - fribidi=1.0.10=h36c2ea0_0
  - gcc_impl_linux-64=9.4.0=h03d3576_11
  - gcc_linux-64=9.4.0=h391b98a_4
  - gettext=0.19.8.1=h73d1719_1008
  - gfortran_impl_linux-64=9.4.0=h0003116_11
  - gfortran_linux-64=9.4.0=hf0ab688_4
  - gitdb=4.0.9=pyhd8ed1ab_0
  - gitpython=3.1.26=pyhd8ed1ab_0
  - glpk=4.65=h9202a9a_1004
  - gmp=6.2.1=h58526e2_0
  - graphite2=1.3.13=h58526e2_1001
  - gsl=2.7=he838d99_0
  - gxx_impl_linux-64=9.4.0=h03d3576_11
  - gxx_linux-64=9.4.0=h0316aca_4
  - harfbuzz=3.2.0=hb4a5f5f_0
  - hdf5=1.12.1=nompi_h7f166f4_103
  - icu=69.1=h9c3ff4c_0
  - idna=3.3=pyhd8ed1ab_0
  - importlib-metadata=4.10.1=py310hff52083_0
  - importlib_resources=5.4.0=pyhd8ed1ab_0
  - ipykernel=6.7.0=py310hfdc917e_0
  - ipython=8.0.1=py310hff52083_0
  - ipython_genutils=0.2.0=py_1
  - jbig=2.1=h7f98852_2003
  - jedi=0.18.1=py310hff52083_0
  - jinja2=3.0.3=pyhd8ed1ab_0
  - joblib=1.1.0=pyhd8ed1ab_0
  - jpeg=9d=h36c2ea0_0
  - json5=0.9.5=pyh9f0ad1d_0
  - jsonschema=4.4.0=pyhd8ed1ab_0
  - jupyter-server-mathjax=0.2.3=pyhd8ed1ab_0
  - jupyter_client=7.1.1=pyhd8ed1ab_0
  - jupyter_core=4.9.1=py310hff52083_1
  - jupyter_server=1.13.3=pyhd8ed1ab_0
  - jupyterlab=3.2.8=pyhd8ed1ab_0
  - jupyterlab-git=0.34.2=pyhd8ed1ab_0
  - jupyterlab_pygments=0.1.2=pyh9f0ad1d_0
  - jupyterlab_server=2.10.3=pyhd8ed1ab_0
  - kernel-headers_linux-64=2.6.32=he073ed8_15
  - krb5=1.19.2=h48eae69_3
  - ld_impl_linux-64=2.36.1=hea4e1c9_2
  - lerc=3.0=h9c3ff4c_0
  - libblas=3.9.0=13_linux64_openblas
  - libcblas=3.9.0=13_linux64_openblas
  - libcurl=7.81.0=h494985f_0
  - libdeflate=1.8=h7f98852_0
  - libedit=3.1.20191231=he28a2e2_2
  - libev=4.33=h516909a_1
  - libffi=3.4.2=h7f98852_5
  - libgcc-devel_linux-64=9.4.0=hd854feb_11
  - libgcc-ng=11.2.0=h1d223b6_11
  - libgfortran-ng=11.2.0=h69a702a_11
  - libgfortran5=11.2.0=h5c6108e_11
  - libglib=2.70.2=h174f98d_1
  - libgomp=11.2.0=h1d223b6_11
  - libiconv=1.16=h516909a_0
  - liblapack=3.9.0=13_linux64_openblas
  - libllvm11=11.1.0=hf817b99_2
  - libnghttp2=1.43.0=ha19adfc_1
  - libnsl=2.0.0=h7f98852_0
  - libopenblas=0.3.18=pthreads_h8fe5266_0
  - libpng=1.6.37=h21135ba_2
  - libsanitizer=9.4.0=h79bfe98_11
  - libsodium=1.0.18=h36c2ea0_1
  - libssh2=1.10.0=ha35d2d1_2
  - libstdcxx-devel_linux-64=9.4.0=hd854feb_11
  - libstdcxx-ng=11.2.0=he4da1e4_11
  - libtiff=4.3.0=h6f004c6_2
  - libuuid=2.32.1=h7f98852_1000
  - libuv=1.42.0=h7f98852_0
  - libwebp-base=1.2.1=h7f98852_0
  - libxcb=1.13=h7f98852_1004
  - libxml2=2.9.12=h885dcf4_1
  - libzlib=1.2.11=h36c2ea0_1013
  - llvmlite=0.38.0=py310hee97dad_0
  - lz4-c=1.9.3=h9c3ff4c_1
  - make=4.3=hd18ef5c_1
  - markupsafe=2.0.1=py310h6acc77f_1
  - matplotlib-inline=0.1.3=pyhd8ed1ab_0
  - metis=5.1.0=h58526e2_1006
  - mistune=0.8.4=py310h6acc77f_1005
  - mpfr=4.1.0=h9202a9a_1
  - mypy_extensions=0.4.3=py310hff52083_4
  - nbclassic=0.3.5=pyhd8ed1ab_0
  - nbclient=0.5.10=pyhd8ed1ab_1
  - nbconvert=6.4.0=py310hff52083_0
  - nbdime=3.1.1=pyhd8ed1ab_0
  - nbformat=5.1.3=pyhd8ed1ab_0
  - ncurses=6.2=h58526e2_4
  - nest-asyncio=1.5.4=pyhd8ed1ab_0
  - nodejs=17.1.0=hb5e7134_2
  - notebook=6.4.7=pyha770c72_0
  - numba=0.55.0=py310h00e6091_0
  - numpy=1.21.6=py310h45f3432_0
  - openssl=3.0.3=h166bdaf_0
  - packaging=21.3=pyhd8ed1ab_0
  - pandoc=2.17.0.1=h7f98852_0
  - pandocfilters=1.5.0=pyhd8ed1ab_0
  - pango=1.50.3=h9967ed3_0
  - parso=0.8.3=pyhd8ed1ab_0
  - pathspec=0.9.0=pyhd8ed1ab_0
  - pcre=8.45=h9c3ff4c_0
  - pcre2=10.37=h032f7d1_0
  - pexpect=4.8.0=pyh9f0ad1d_2
  - pickleshare=0.7.5=py_1003
  - pip=21.3.1=pyhd8ed1ab_0
  - pixman=0.40.0=h36c2ea0_0
  - platformdirs=2.3.0=pyhd8ed1ab_0
  - prometheus_client=0.12.0=pyhd8ed1ab_0
  - prompt-toolkit=3.0.24=pyha770c72_0
  - pthread-stubs=0.4=h36c2ea0_1001
  - ptyprocess=0.7.0=pyhd3deb0d_0
  - pure_eval=0.2.1=pyhd8ed1ab_1
  - pycparser=2.21=pyhd8ed1ab_0
  - pygments=2.11.2=pyhd8ed1ab_0
  - pyopenssl=23.2.0=pyhd8ed1ab_1
  - pyparsing=3.0.6=pyhd8ed1ab_0
  - pyrsistent=0.18.1=py310h6acc77f_0
  - pysocks=1.7.1=py310hff52083_4
  - python=3.10.2=h543edf9_0_cpython
  - python-dateutil=2.8.2=pyhd8ed1ab_0
  - python_abi=3.10=2_cp310
  - pytz=2021.3=pyhd8ed1ab_0
  - pyzmq=22.3.0=py310h675a958_1
  - r-askpass=1.1=r41hcfec24a_2
  - r-assertthat=0.2.1=r41hc72bb7e_2
  - r-backports=1.4.1=r41hcfec24a_0
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  - r-bit64=4.0.5=r41hcfec24a_0
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  - r-brio=1.1.3=r41hcfec24a_0
  - r-broom=0.7.11=r41hc72bb7e_0
  - r-bslib=0.3.1=r41hc72bb7e_0
  - r-cachem=1.0.6=r41hcfec24a_0
  - r-callr=3.7.0=r41hc72bb7e_0
  - r-caret=6.0_90=r41hcfec24a_0
  - r-cellranger=1.1.0=r41hc72bb7e_1004
  - r-class=7.3_20=r41hcfec24a_0
  - r-cli=3.1.0=r41h03ef668_0
  - r-clipr=0.7.1=r41hc72bb7e_0
  - r-cluster=2.1.2=r41h859d828_0
  - r-codetools=0.2_18=r41hc72bb7e_0
  - r-colorspace=2.0_2=r41hcfec24a_0
  - r-commonmark=1.7=r41hcfec24a_1002
  - r-cpp11=0.4.2=r41hc72bb7e_0
  - r-crayon=1.4.2=r41hc72bb7e_0
  - r-crul=1.2.0=r41h785f33e_0
  - r-curl=4.3.2=r41hcfec24a_0
  - r-data.table=1.14.2=r41hcfec24a_0
  - r-dbi=1.1.2=r41hc72bb7e_0
  - r-dbplyr=2.1.1=r41hc72bb7e_0
  - r-desc=1.4.0=r41hc72bb7e_0
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  - r-e1071=1.7_9=r41h03ef668_0
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  - r-evaluate=0.14=r41hc72bb7e_2
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  - sed=4.8=he412f7d_0
  - send2trash=1.8.0=pyhd8ed1ab_0
  - setuptools=60.5.0=py310hff52083_0
  - six=1.16.0=pyh6c4a22f_0
  - smmap=3.0.5=pyh44b312d_0
  - sniffio=1.2.0=py310hff52083_2
  - sqlite=3.37.0=h9cd32fc_0
  - stack_data=0.1.4=pyhd8ed1ab_0
  - subread=2.0.1=h5bf99c6_1
  - suitesparse=5.10.1=h9e50725_1
  - sysroot_linux-64=2.12=he073ed8_15
  - tbb=2021.5.0=h4bd325d_0
  - terminado=0.12.1=py310hff52083_1
  - testpath=0.5.0=pyhd8ed1ab_0
  - texttable=1.6.4=pyhd8ed1ab_0
  - threadpoolctl=3.1.0=pyh8a188c0_0
  - tk=8.6.11=h27826a3_1
  - tktable=2.10=hb7b940f_3
  - tomli=1.2.2=pyhd8ed1ab_0
  - tornado=6.1=py310h6acc77f_2
  - traitlets=5.1.1=pyhd8ed1ab_0
  - typed-ast=1.5.1=py310h6acc77f_0
  - typing_extensions=4.0.1=pyha770c72_0
  - urllib3=1.26.8=pyhd8ed1ab_1
  - wcwidth=0.2.5=pyh9f0ad1d_2
  - webencodings=0.5.1=py_1
  - websocket-client=1.2.3=pyhd8ed1ab_0
  - wheel=0.37.1=pyhd8ed1ab_0
  - xorg-kbproto=1.0.7=h7f98852_1002
  - xorg-libice=1.0.10=h7f98852_0
  - xorg-libsm=1.2.3=hd9c2040_1000
  - xorg-libx11=1.7.2=h7f98852_0
  - xorg-libxau=1.0.9=h7f98852_0
  - xorg-libxdmcp=1.1.3=h7f98852_0
  - xorg-libxext=1.3.4=h7f98852_1
  - xorg-libxrender=0.9.10=h7f98852_1003
  - xorg-libxt=1.2.1=h7f98852_2
  - xorg-renderproto=0.11.1=h7f98852_1002
  - xorg-xextproto=7.3.0=h7f98852_1002
  - xorg-xproto=7.0.31=h7f98852_1007
  - xz=5.2.5=h516909a_1
  - zeromq=4.3.4=h9c3ff4c_1
  - zipp=3.7.0=pyhd8ed1ab_0
  - zlib=1.2.11=h36c2ea0_1013
  - zstd=1.5.1=ha95c52a_0
  - pip:
    - anndata==0.9.1
    - anndata2ri==1.1
    - celltypist==1.6.1
    - contourpy==1.1.0
    - cycler==0.11.0
    - dunamai==1.17.0
    - et-xmlfile==1.1.0
    - fonttools==4.40.0
    - get-version==3.5.4
    - h5py==3.8.0
    - igraph==0.10.8
    - kiwisolver==1.4.4
    - leidenalg==0.10.1
    - loompy==3.0.7
    - matplotlib==3.7.1
    - natsort==8.3.1
    - networkx==3.1
    - numpy-groupies==0.9.22
    - openpyxl==3.1.2
    - pandas==2.0.2
    - patsy==0.5.3
    - pillow==9.5.0
    - pynndescent==0.5.10
    - pytz-deprecation-shim==0.1.0.post0
    - rpy2==3.5.12
    - scanpy==1.9.3
    - scvelo==0.2.5
    - seaborn==0.12.2
    - session-info==1.0.0
    - statsmodels==0.14.0
    - stdlib-list==0.8.0
    - tqdm==4.65.0
    - tzdata==2023.3
    - tzlocal==4.3
    - umap-learn==0.5.3
prefix: ~/miniconda3/envs/scMIR